2023
Bartosovic, M., Castelo-Branco, G. Multimodal chromatin profiling using nanobody-based single-cell CUT&Tag. Nat Biotechnol 41, 794–805 (2023). https://doi.org/10.1038/s41587-022-01535-4
Zhang, D., Deng, Y., Kukanja, P., Agirre E., Bartosovic M., Dong M., Ma C., Ma S., Su G., Bao S., Liu Y., Xiao Y., Rosoklija GB., Dwork AJ., Mann JJ., Leong KW., Boldrini M, Wang L., Haeussler M., Raphael BJ, Kluger Y., Castelo-Branco G., Fan R., Spatial epigenome–transcriptome co-profiling of mammalian tissues. Nature (2023). https://doi.org/10.1038/s41586-023-05795-1
2022
Yanxiang Deng, Marek Bartosovic, Petra Kukanja, Di Zhang, Yang Liu, Graham Su, Archibald Enninful, Zhiliang Bai, Gonçalo Castelo-Branco, Rong Fan, Spatial Epigenome Profiling at Tissue Scale and Cellular Level, Science, 2022 Feb 11;375(6581):681-686. doi: 10.1126/science.abg7216.
Yanxiang Deng, Marek Bartosovic, Sai Ma, Di Zhang, Yang Liu, Xiaoyu Qin, Graham Su, Mina L. Xu, Stephanie Halene, Joseph E. Craft, Gonçalo Castelo-Branco, Rong Fan Spatial-ATAC-seq: spatially resolved chromatin accessibility profiling of tissues at genome scale and cellular level, Nature 609, 375–383 (2022). https://doi.org/10.1038/s41586-022-05094-1
Mandy Meijer, Eneritz Agirre, Mukund Kabbe, Cassandra A van Tuijn, Abeer Heskol, Chao Zheng, Ana Mendanha Falcão, Marek Bartosovic, Leslie Kirby, Daniela Calini, Michael R Johnson, M Ryan Corces, Thomas J Montine, Xingqi Chen, Howard Y Chang, Dheeraj Malhotra, Gonçalo Castelo-Branco, Epigenomic priming of immune genes implicates oligodendroglia in multiple sclerosis susceptibility, Neuron, 2022 Jan 28;S0896-6273(21)01089-8. doi: 10.1016/j.neuron.2021.12.034.
Ivana Cavallin, Marek Bartosovic, Tomas Skalicky, Praveenkumar Rengaraj, Martin Demko, Martina Christina Schmidt-Dengler, Aleksej Drino, Mark Helm, Stepanka Vanacova, HITS-CLIP analysis of human ALKBH8 reveals interactions with fully processed substrate tRNAs and with specific noncoding RNAs, doi: 10.1261/rna.079421.122, RNA 2022. 28: 1568-1581
2021
Bartosovic, M., Kabbe, M. & Castelo-Branco, G. Single-cell CUT&Tag profiles histone modifications and transcription factors in complex tissues. Nat Biotechnol 39, 825–835 (2021). https://doi.org/10.1038/s41587-021-00869-9
2018
Covelo‐Molares, H, Bartosovic, M, Vanacova, S. RNA methylation in nuclear pre‐mRNA processing. WIREs RNA. 2018; 9:e1489. https://doi.org/10.1002/wrna.1489
2017
Bartosovic M., Covelo Molares H, Gregorova P, Hrossova D, Kudla D, Vanacova S, N6-methyladenosine demethylase FTO targets pre-mRNAs and regulates alternative splicing and 3′-end processing, Nucleic Acids Research, Volume 45, Issue 19, 2 November 2017, Pages 11356-11370, https://doi.org/10.1093/nar/gkx778
2015
Hrossova D, Sikorsky T, Potesil D, Bartosovic M, Pasulka J, Zdrahal Z, Stefl R, Vanacova S, RBM7 subunit of the NEXT complex binds U-rich sequences and targets 3′-end extended forms of snRNAs, Nucleic Acids Research, Volume 43, Issue 8, 30 April 2015, Pages 4236–4248, https://doi.org/10.1093/nar/gkv240